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» Computing with Evolving Proteins
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CBMS
2006
IEEE
15 years 3 months ago
MS2DB: An Algorithmic Approach to Determine Disulfide Linkage Patterns
Determining the number and location of disulfide bonds within a protein provide valuable insight into the protein’s three-dimensional structure. Purely computational methods tha...
Timothy Lee, Rahul Singh, Ten-Yang Yen, Bruce Mach...
WCE
2007
14 years 11 months ago
A Patch-by-Patch Shape Matching Procedure for Rigid Body Docking
Abstract—Docking simulates molecular interactions. Protein - protein docking, owing to the sizes of molecules, is a very challenging problem. As the number of degrees of freedom ...
Vipin K. Tripathi
JCC
2006
57views more  JCC 2006»
14 years 9 months ago
A search algorithm for fixed-composition protein design
: We present a computational protein design algorithm for finding low-energy sequences of fixed amino acid composition. The search algorithms used in protein design typically do no...
Geoffrey K. Hom, Stephen L. Mayo
TCBB
2008
108views more  TCBB 2008»
14 years 9 months ago
Statistical Characterization of Protein Ensembles
When accounting for structural fluctuations or measurement errors, a single rigid structure may not be sufficient to represent a protein. One approach to solve this problem is to r...
Diego Rother, Guillermo Sapiro, Vijay Pande
EVOW
2005
Springer
15 years 3 months ago
Evolving Reversible Circuits for the Even-Parity Problem
Reversible computing basically means computation with less or not at all electrical power. Since the standard binary gates are not usually reversible we use the Fredkin gate in ord...
Mihai Oltean