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RECOMB
2001
Springer
16 years 5 days ago
Context-specific Bayesian clustering for gene expression data
The recent growth in genomic data and measurements of genome-wide expression patterns allows us to apply computational tools to examine gene regulation by transcription factors. I...
Yoseph Barash, Nir Friedman
VECPAR
2004
Springer
15 years 5 months ago
Automatically Tuned FFTs for BlueGene/L's Double FPU
Abstract. IBM is currently developing the new line of BlueGene/L supercomputers. The top-of-the-line installation is planned to be a 65,536 processors system featuring a peak perfo...
Franz Franchetti, Stefan Kral, Juergen Lorenz, Mar...
NN
2007
Springer
267views Neural Networks» more  NN 2007»
14 years 11 months ago
Modeling of gene regulatory networks with hybrid differential evolution and particle swarm optimization
In the last decade, recurrent neural networks (RNNs) have attracted more efforts in inferring genetic regulatory networks (GRNs), using time series gene expression data from micro...
Rui Xu, Ganesh K. Venayagamoorthy, Donald C. Wunsc...
CMSB
2006
Springer
15 years 3 months ago
Randomization and Feedback Properties of Directed Graphs Inspired by Gene Networks
Having in mind the large-scale analysis of gene regulatory networks, we review a graph decimation algorithm, called "leaf-removal", which can be used to evaluate the feed...
M. Cosentino Lagomarsino, P. Jona, B. Bassetti
NAR
2008
142views more  NAR 2008»
14 years 11 months ago
CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining
CMGSDB (Database for Computational Modeling of Gene Silencing) is an integration of heterogeneous data sources about Caenorhabditis elegans with capabilities for compositional dat...
Amrita Pati, Ying Jin, Karsten Klage, Richard F. H...