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NAR
2011
224views Computer Vision» more  NAR 2011»
14 years 2 months ago
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and meta
Correlations of gene-to-gene co-expression and metabolite-to-metabolite co-accumulation calculated from large amounts of transcriptome and metabolome data are useful for uncoverin...
Nozomu Sakurai, Takeshi Ara, Yoshiyuki Ogata, Ryos...
TITB
2010
148views Education» more  TITB 2010»
14 years 6 months ago
Coclustering for cross-subject fiber tract analysis through diffusion tensor imaging
Abstract--One of the fundamental goals of computational neuroscience is the study of anatomical features that reflect the functional organization of the brain. The study of physica...
Cui Lin, Darshan Pai, Shiyong Lu, Otto Muzik, Jing...
BMCBI
2007
134views more  BMCBI 2007»
14 years 12 months ago
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
Background: The availability of microarrays measuring thousands of genes simultaneously across hundreds of biological conditions represents an opportunity to understand both indiv...
Curtis Huttenhower, Avi I. Flamholz, Jessica N. La...
BMCBI
2010
129views more  BMCBI 2010»
14 years 12 months ago
A temporal precedence based clustering method for gene expression microarray data
Background: Time-course microarray experiments can produce useful data which can help in understanding the underlying dynamics of the system. Clustering is an important stage in m...
Ritesh Krishna, Chang-Tsun Li, Vicky Buchanan-Woll...
BMCBI
2006
239views more  BMCBI 2006»
14 years 12 months ago
Applying dynamic Bayesian networks to perturbed gene expression data
Background: A central goal of molecular biology is to understand the regulatory mechanisms of gene transcription and protein synthesis. Because of their solid basis in statistics,...
Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek...