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NAR
2006
83views more  NAR 2006»
14 years 11 months ago
KOBAS server: a web-based platform for automated annotation and pathway identification
There is an increasing need to automatically annotate a set of genes or proteins (from genome sequencing, DNA microarray analysis or protein 2D gel experiments) using controlled v...
Jianmin Wu, Xizeng Mao, Tao Cai, Jingchu Luo, Lipi...
BMCBI
2010
142views more  BMCBI 2010»
14 years 9 months ago
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
Background: High-throughput profiling of DNA methylation status of CpG islands is crucial to understand the epigenetic regulation of genes. The microarray-based Infinium methylati...
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Ja...
KES
2010
Springer
14 years 10 months ago
Visualization and Language Processing for Supporting Analysis across the Biomedical Literature
Finding relevant publications in the large and rapidly growing body of biomedical literature is challenging. Search queries on PubMed often return thousands of publications and it ...
Carsten Görg, Hannah J. Tipney, Karin Verspoo...
BMCBI
2010
100views more  BMCBI 2010»
14 years 12 months ago
Trimming of mammalian transcriptional networks using network component analysis
Background: Network Component Analysis (NCA) has been used to deduce the activities of transcription factors (TFs) from gene expression data and the TF-gene binding relationship. ...
Linh M. Tran, Daniel R. Hyduke, James C. Liao
BMCBI
2005
148views more  BMCBI 2005»
14 years 11 months ago
NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans
Background: NemaFootPrinter (Nematode Transcription Factor Scan Through Philogenetic Footprinting) is a web-based software for interactive identification of conserved, non-exonic ...
Davide Rambaldi, Alessandro Guffanti, Paolo Morand...