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» Conservativity in Structured Ontologies
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NAR
2006
177views more  NAR 2006»
14 years 11 months ago
PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways
The PUMA2 system (available at http://compbio.mcs. 10 anl.gov/puma2) is an interactive, integrated bioinformatics environment for high-throughput genetic sequence analysis and met...
Natalia Maltsev, Elizabeth M. Glass, Dinanath Sula...
BMCBI
2005
116views more  BMCBI 2005»
14 years 11 months ago
Dynamic covariation between gene expression and proteome characteristics
Background: Cells react to changing intra- and extracellular signals by dynamically modulating complex biochemical networks. Cellular responses to extracellular signals lead to ch...
Mansour Taghavi Azar Sharabiani, Markku Siermala, ...
BMCBI
2005
155views more  BMCBI 2005»
14 years 11 months ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley
JUCS
2007
152views more  JUCS 2007»
14 years 11 months ago
The SEWASIE Network of Mediator Agents for Semantic Search
: Integration of heterogeneous information in the context of Internet becomes a key activity to enable a more organized and semantically meaningful access to data sources. As Inter...
Domenico Beneventano, Sonia Bergamaschi, Francesco...
BMCBI
2004
106views more  BMCBI 2004»
14 years 11 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...