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» Conservativity in Structured Ontologies
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BMCBI
2008
83views more  BMCBI 2008»
15 years 5 months ago
An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
Background: Aligning RNA sequences with low sequence identity has been a challenging problem since such a computation essentially needs an algorithm with high complexities for tak...
Akito Taneda
BMCBI
2007
153views more  BMCBI 2007»
15 years 5 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
COMPLIFE
2005
Springer
15 years 11 months ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert
BMCBI
2007
113views more  BMCBI 2007»
15 years 5 months ago
Hinge Atlas: relating protein sequence to sites of structural flexibility
Background: Relating features of protein sequences to structural hinges is important for identifying domain boundaries, understanding structure-function relationships, and designi...
Samuel Flores, Long J. Lu, Julie Yang, Nicholas Ca...
TIME
1994
IEEE
15 years 9 months ago
A Temporal Structure that Distinguishes between the Past, Present, and Future
We present a two dimensional temporal structure that has an ever changing present. Relative to each present, there is a past and future. The main representational advantage our tw...
André Trudel