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HPDC
2010
IEEE
15 years 12 days ago
Data parallelism in bioinformatics workflows using Hydra
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Fábio Coutinho, Eduardo S. Ogasawara, Danie...
IPPS
2006
IEEE
15 years 5 months ago
Reducing reconfiguration time of reconfigurable computing systems in integrated temporal partitioning and physical design framew
In reconfigurable systems, reconfiguration latency is a very important factor impact the system performance. In this paper, a framework is proposed that integrates the temporal pa...
Farhad Mehdipour, Morteza Saheb Zamani, H. R. Ahma...
DAC
2006
ACM
16 years 8 days ago
Novel full-chip gridless routing considering double-via insertion
As the technology node advances into the nanometer era, via-open defects are one of the dominant failures. To improve via yield and reliability, redundant-via insertion is a highl...
Huang-Yu Chen, Mei-Fang Chiang, Yao-Wen Chang, Lum...
JPDC
2007
167views more  JPDC 2007»
14 years 11 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
ICPP
2009
IEEE
15 years 6 months ago
Accelerating Checkpoint Operation by Node-Level Write Aggregation on Multicore Systems
—Clusters and applications continue to grow in size while their mean time between failure (MTBF) is getting smaller. Checkpoint/Restart is becoming increasingly important for lar...
Xiangyong Ouyang, Karthik Gopalakrishnan, Dhabales...