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BMCBI
2008
166views more  BMCBI 2008»
14 years 11 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...
ICCSA
2009
Springer
15 years 5 months ago
YAO: A Software for Variational Data Assimilation Using Numerical Models
Variational data assimilation consists in estimating control parameters of a numerical model in order to minimize the misfit between the forecast values and some actual observatio...
Luigi Nardi, Charles Sorror, Fouad Badran, Sylvie ...
BMCBI
2010
139views more  BMCBI 2010»
14 years 11 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...
DATAMINE
2008
143views more  DATAMINE 2008»
14 years 10 months ago
Automatically countering imbalance and its empirical relationship to cost
Learning from imbalanced datasets presents a convoluted problem both from the modeling and cost standpoints. In particular, when a class is of great interest but occurs relatively...
Nitesh V. Chawla, David A. Cieslak, Lawrence O. Ha...
BMCBI
2006
123views more  BMCBI 2006»
14 years 10 months ago
Characterizing disease states from topological properties of transcriptional regulatory networks
Background: High throughput gene expression experiments yield large amounts of data that can augment our understanding of disease processes, in addition to classifying samples. He...
David Tuck, Harriet Kluger, Yuval Kluger