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» Constraint Based Methods for Biological Sequence Analysis
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ICML
2009
IEEE
16 years 8 months ago
Structure learning with independent non-identically distributed data
There are well known algorithms for learning the structure of directed and undirected graphical models from data, but nearly all assume that the data consists of a single i.i.d. s...
Robert E. Tillman
BMCBI
2005
127views more  BMCBI 2005»
15 years 7 months ago
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
Etienne Larsabal, Antoine Danchin
ICA
2007
Springer
15 years 9 months ago
Bayesian Estimation of Overcomplete Independent Feature Subspaces for Natural Images
In this paper, we propose a Bayesian estimation approach to extend independent subspace analysis (ISA) for an overcomplete representation without imposing the orthogonal constraint...
Libo Ma, Liqing Zhang
SIAMCOMP
2012
13 years 10 months ago
Randomized Competitive Algorithms for Generalized Caching
We consider online algorithms for the generalized caching problem. Here we are given a cache of size k and pages with arbitrary sizes and fetching costs. Given a request sequence ...
Nikhil Bansal, Niv Buchbinder, Joseph Naor
BMCBI
2006
126views more  BMCBI 2006»
15 years 7 months ago
A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data
Background: As a variety of functional genomic and proteomic techniques become available, there is an increasing need for functional analysis methodologies that integrate heteroge...
Zizhen Yao, Walter L. Ruzzo