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» Constraint Based Methods for Biological Sequence Analysis
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92
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KDID
2003
93views Database» more  KDID 2003»
15 years 1 months ago
A Framework for Frequent Sequence Mining under Generalized Regular Expression Constraints
This paper provides a framework for the extraction of frequent sequences satisfying a given regular expression (RE) constraint. We take advantage of the information contained in th...
Hunor Albert-Lorincz, Jean-François Boulica...
90
Voted
BMCBI
2008
160views more  BMCBI 2008»
15 years 19 days ago
Dynamic sensitivity analysis of biological systems
Background: A mathematical model to understand, predict, control, or even design a real biological system is a central theme in systems biology. A dynamic biological system is alw...
Wu Hsiung Wu, Feng Sheng Wang, Maw Shang Chang
97
Voted
RECOMB
2003
Springer
16 years 25 days ago
A multi-expert system for the automatic detection of protein domains from sequence information
We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
Niranjan Nagarajan, Golan Yona
152
Voted
BMCBI
2005
201views more  BMCBI 2005»
15 years 13 days ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
103
Voted
IDA
2005
Springer
15 years 6 months ago
Biological Cluster Validity Indices Based on the Gene Ontology
With the invention of biotechnological high throughput methods like DNA microarrays and the analysis of the resulting huge amounts of biological data, clustering algorithms gain ne...
Nora Speer, Christian Spieth, Andreas Zell