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» Constraint Based Methods for Biological Sequence Analysis
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114
Voted
CANDC
2008
ACM
15 years 19 days ago
'Genome order index' should not be used for defining compositional constraints in nucleotide sequences
Background: The Z-curve is a three dimensional representation of DNA sequences proposed over a decade ago and has been extensively applied to sequence segmentation, horizontal gen...
Eran Elhaik, Dan Graur, Kresimir Josic
JEC
2006
113views more  JEC 2006»
15 years 15 days ago
CyNC: A method for real time analysis of systems with cyclic data flows
The paper addresses a novel method for realtime analysis of systems with cyclic data flows. The presented method is based on Network Calculus principles, where upper and lower flo...
Henrik Schiøler, Jens Dalsgaard Nielsen, Ki...
107
Voted
CIBCB
2005
IEEE
15 years 2 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos
113
Voted
RECOMB
2006
Springer
16 years 25 days ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
102
Voted
ISVC
2009
Springer
15 years 7 months ago
Wavelet-Based Representation of Biological Shapes
Modeling, characterization and analysis of biological shapes and forms are important in many computational biology studies. Shape representation challenges span the spectrum from s...
Bin Dong, Yu Mao, Ivo D. Dinov, Zhuowen Tu, Yongga...