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» Constraint Based Methods for Biological Sequence Analysis
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120
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SAS
2004
Springer
136views Formal Methods» more  SAS 2004»
15 years 5 months ago
Constraint-Based Linear-Relations Analysis
Abstract. Linear-relations analysis of transition systems discovers linear invariant relationships among the variables of the system. These relationships help establish important s...
Sriram Sankaranarayanan, Henny B. Sipma, Zohar Man...
BMCBI
2005
138views more  BMCBI 2005»
15 years 14 days ago
Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
Background: The chemical property and biological function of a protein is a direct consequence of its primary structure. Several algorithms have been developed which determine ali...
Kshitiz Gupta, Dina Thomas, S. V. Vidya, K. V. Ven...
ICCV
1999
IEEE
15 years 4 months ago
Multi-Frame Optical Flow Estimation using Subspace Constraints
We show that the set of all ow- elds in a sequence of frames imaging a rigid scene resides in a lowdimensional linear subspace. Based on this observation, we develop a method for ...
Michal Irani
92
Voted
RECOMB
2004
Springer
16 years 26 days ago
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement
In order to apply gene-order rearrangement algorithms to the comparison of genome sequences, Pevzner and Tesler [9] bypass gene finding and ortholog identification, and use the or...
David Sankoff, Phil Trinh
102
Voted
CIBB
2008
15 years 2 months ago
Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
Dino Franklin, Somdutta Dhir, Sándor Pongor