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» Constraint Based Methods for Biological Sequence Analysis
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108
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HEURISTICS
2010
14 years 10 months ago
A shift sequence based approach for nurse scheduling and a new benchmark dataset
This paper investigates an adaptive constructive method for solving nurse rostering problems. The constraints considered in the problems are categorised into three classes: those t...
Peter Brucker, Edmund K. Burke, Timothy Curtois, R...
109
Voted
GECCO
1999
Springer
15 years 4 months ago
Reaction Temperature Constraints in DNA Computing
Using the thermodynamics of DNA melting, a technique is proposed to choose a reaction temperature for the DNA computation that minimizes the potential for mishybridizations. Adlem...
Russell J. Deaton
88
Voted
RECOMB
2000
Springer
15 years 4 months ago
Early eukaryote evolution based on mitochondrial gene order breakpoints
We present a general heuristicfor the median problem for induced breakpoints on genomes with unequal gene content and incorporate this into a routine for estimating optimal gene o...
David Sankoff, David Bryant, Mélanie Deneau...
BMCBI
2004
114views more  BMCBI 2004»
15 years 13 days ago
Analysis of superfamily specific profile-profile recognition accuracy
Background: Annotation of sequences that share little similarity to sequences of known function remains a major obstacle in genome annotation. Some of the best methods of detectin...
James A. Casbon, Mansoor A. S. Saqi
CIKM
2005
Springer
15 years 6 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...