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» Constraint Based Methods for Biological Sequence Analysis
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HEURISTICS
2010
15 years 1 months ago
A shift sequence based approach for nurse scheduling and a new benchmark dataset
This paper investigates an adaptive constructive method for solving nurse rostering problems. The constraints considered in the problems are categorised into three classes: those t...
Peter Brucker, Edmund K. Burke, Timothy Curtois, R...
GECCO
1999
Springer
15 years 8 months ago
Reaction Temperature Constraints in DNA Computing
Using the thermodynamics of DNA melting, a technique is proposed to choose a reaction temperature for the DNA computation that minimizes the potential for mishybridizations. Adlem...
Russell J. Deaton
RECOMB
2000
Springer
15 years 8 months ago
Early eukaryote evolution based on mitochondrial gene order breakpoints
We present a general heuristicfor the median problem for induced breakpoints on genomes with unequal gene content and incorporate this into a routine for estimating optimal gene o...
David Sankoff, David Bryant, Mélanie Deneau...
BMCBI
2004
114views more  BMCBI 2004»
15 years 4 months ago
Analysis of superfamily specific profile-profile recognition accuracy
Background: Annotation of sequences that share little similarity to sequences of known function remains a major obstacle in genome annotation. Some of the best methods of detectin...
James A. Casbon, Mansoor A. S. Saqi
CIKM
2005
Springer
15 years 10 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...