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» Constraint Based Methods for Biological Sequence Analysis
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126
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RECOMB
2002
Springer
16 years 27 days ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
83
Voted
PKDD
2010
Springer
129views Data Mining» more  PKDD 2010»
14 years 11 months ago
Learning Algorithms for Link Prediction Based on Chance Constraints
In this paper, we consider the link prediction problem, where we are given a partial snapshot of a network at some time and the goal is to predict the additional links formed at a ...
Janardhan Rao Doppa, Jun Yu, Prasad Tadepalli, Lis...
122
Voted
BMCBI
2008
202views more  BMCBI 2008»
15 years 21 days ago
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
Background: Integrating data from multiple global assays and curated databases is essential to understand the spatiotemporal interactions within cells. Different experiments measu...
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
108
Voted
CAIP
1997
Springer
155views Image Analysis» more  CAIP 1997»
15 years 4 months ago
Discrete-Time Rigidity-Constrained Optical Flow
An algorithm for optical ow estimation is presented for the case of discrete-time motion of an uncalibrated camera through a rigid world. Unlike traditional optical ow approaches t...
Jeffrey Mendelsohn, Eero P. Simoncelli, Ruzena Baj...
BMCBI
2008
130views more  BMCBI 2008»
15 years 21 days ago
IDEA: Interactive Display for Evolutionary Analyses
Background: The availability of complete genomic sequences for hundreds of organisms promises to make obtaining genome-wide estimates of substitution rates, selective constraints ...
Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonath...