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» Constraint Based Methods for Biological Sequence Analysis
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ICASSP
2007
IEEE
15 years 11 months ago
Fast Search of Sequences with Complex Symbol Correlations using Profile Context-Sensitive HMMS and Pre-Screening Filters
Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
Byung-Jun Yoon, P. P. Vaidyanathan
BMCBI
2007
115views more  BMCBI 2007»
15 years 4 months ago
Comparing sequences without using alignments: application to HIV/SIV subtyping
Background: In general, the construction of trees is based on sequence alignments. This procedure, however, leads to loss of informationwhen parts of sequence alignments (for inst...
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Z...
135
Voted
BMCBI
2006
144views more  BMCBI 2006»
15 years 4 months ago
methBLAST and methPrimerDB: web-tools for PCR based methylation analysis
Background: DNA methylation plays an important role in development and tumorigenesis by epigenetic modification and silencing of critical genes. The development of PCR-based methy...
Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Ev...
149
Voted
SISAP
2010
IEEE
135views Data Mining» more  SISAP 2010»
15 years 3 months ago
Improving the similarity search of tandem mass spectra using metric access methods
In biological applications, the tandem mass spectrometry is a widely used method for determining protein and peptide sequences from an ”in vitro” sample. The sequences are not...
Jiri Novák, Tomás Skopal, David Hoks...
TITB
2008
117views more  TITB 2008»
15 years 4 months ago
Image-Based Gating of Intravascular Ultrasound Pullback Sequences
Intravascularultrasound (IVUS) sequences recorded in vivo are subject to a wide array of motion artifacts as the majority of these studies are performed within the coronary arterie...
Sean M. O'Malley, J. F. Granada, Stephane G. Carli...