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PADL
2004
Springer
15 years 2 months ago
Observing Functional Logic Computations
Abstract. A lightweight approach to debugging functional logic programs by observations is presented, implemented for the language Curry. The Curry Object Observation System (COOSy...
Bernd Brassel, Olaf Chitil, Michael Hanus, Frank H...
BMCBI
2007
106views more  BMCBI 2007»
14 years 9 months ago
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach
Background: Selenocysteine and pyrrolysine are the 21st and 22nd amino acids, which are genetically encoded by stop codons. Since a number of microbial genomes have been completel...
Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuy...
88
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PKDD
2009
Springer
170views Data Mining» more  PKDD 2009»
15 years 4 months ago
Statistical Relational Learning with Formal Ontologies
Abstract. We propose a learning approach for integrating formal knowledge into statistical inference by exploiting ontologies as a semantically rich and fully formal representation...
Achim Rettinger, Matthias Nickles, Volker Tresp
BMCBI
2006
114views more  BMCBI 2006»
14 years 9 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
BMCBI
2002
108views more  BMCBI 2002»
14 years 9 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy