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BMCBI
2006
133views more  BMCBI 2006»
14 years 9 months ago
Choosing negative examples for the prediction of protein-protein interactions
The protein-protein interaction networks of even well-studied model organisms are sketchy at best, highlighting the continued need for computational methods to help direct experim...
Asa Ben-Hur, William Stafford Noble
EVOW
2004
Springer
15 years 1 months ago
Evolving Regular Expression-Based Sequence Classifiers for Protein Nuclear Localisation
A number of bioinformatics tools use regular expression (RE) matching to locate protein or DNA sequence motifs that have been discovered by researchers in the laboratory. For exam...
Amine Heddad, Markus Brameier, Robert M. MacCallum
BMCBI
2007
168views more  BMCBI 2007»
14 years 9 months ago
Benchmarking consensus model quality assessment for protein fold recognition
Background: Selecting the highest quality 3D model of a protein structure from a number of alternatives remains an important challenge in the field of structural bioinformatics. M...
Liam J. McGuffin
EUROSYS
2007
ACM
15 years 1 months ago
Integrating aspect-orientation and structural annotations to support adaptive middleware
To anticipate or not to anticipate -- that is the question, regarding adaptive middleware in the area of ubiquitous computing. Anticipation can guarantee that both the adapted and...
Holger Mügge, Tobias Rho, Armin B. Cremers
BMCBI
2010
150views more  BMCBI 2010»
14 years 9 months ago
Evolutionary rates at codon sites may be used to align sequences and infer protein domain function
Background: Sequence alignments form part of many investigations in molecular biology, including the determination of phylogenetic relationships, the prediction of protein structu...
Pierre M. Durand, Scott Hazelhurst, Theresa L. Coe...