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FLAIRS
2008
14 years 12 months ago
Contrast Pattern Mining with Gap Constraints for Peptide Folding Prediction
1 In this paper, we propose a peptide folding prediction method which discovers contrast patterns to differentiate and predict peptide folding classes. A contrast pattern is defin...
Chinar C. Shah, Xingquan Zhu, Taghi M. Khoshgoftaa...
CORR
2007
Springer
147views Education» more  CORR 2007»
14 years 9 months ago
Decomposition During Search for Propagation-Based Constraint Solvers
Abstract. We describe decomposition during search (DDS), an integration of And/Or tree search into propagation-based constraint solvers. The presented search algorithm dynamically ...
Martin Mann, Guido Tack, Sebastian Will
110
Voted
BMCBI
2007
124views more  BMCBI 2007»
14 years 9 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
VL
1993
IEEE
159views Visual Languages» more  VL 1993»
15 years 1 months ago
A Visual Logic Programming Language Based on Sets and Partitioning Constraints
This paper presents a new programming language named SPARCL that has four major elements: it is a visual language, it is a logic programming language, it relies on sets to organiz...
Lindsey L. Spratt, Allen L. Ambler
BMCBI
2005
162views more  BMCBI 2005»
14 years 9 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes