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» Constraint Programming in Structural Bioinformatics
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SAMT
2007
Springer
138views Multimedia» more  SAMT 2007»
15 years 6 months ago
A Constraint-Based Graph Visualisation Architecture for Mobile Semantic Web Interfaces
Abstract. Multimodal and dialogue-based mobile interfaces to the Semantic Web offer access to complex knowledge and information structures. We explore more fine-grained co-ordina...
Daniel Sonntag, Philipp Heim
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
15 years 4 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
124
Voted
CORR
2004
Springer
176views Education» more  CORR 2004»
15 years 8 days ago
The First-Order Theory of Sets with Cardinality Constraints is Decidable
Data structures often use an integer variable to keep track of the number of elements they store. An invariant of such data structure is that the value of the integer variable is ...
Viktor Kuncak, Martin C. Rinard
BMCBI
2011
14 years 7 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
BMCBI
2008
116views more  BMCBI 2008»
15 years 16 days ago
Impact of residue accessible surface area on the prediction of protein secondary structures
Background: The problem of accurate prediction of protein secondary structure continues to be one of the challenging problems in Bioinformatics. It has been previously suggested t...
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk...