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» Constraint Programming in Structural Bioinformatics
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85
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ICSE
2007
IEEE-ACM
16 years 16 days ago
Korat: A Tool for Generating Structurally Complex Test Inputs
This paper describes the Korat tool for constraint-based generation of structurally complex test inputs for Java programs. Korat takes (1) an imperative predicate that specifies t...
Aleksandar Milicevic, Sasa Misailovic, Darko Marin...
73
Voted
DNA
2001
Springer
125views Bioinformatics» more  DNA 2001»
15 years 5 months ago
PNA-mediated Whiplash PCR
The directed evolution of proteins, using an in vitro domainal shuffling strategy was proposed in (J. Kolkman and W. Stemmer, Nat. Biotech. 19, 423 (2001). Due to backhybridization...
John A. Rose, Russell J. Deaton, Masami Hagiya, Ak...
AADEBUG
1997
Springer
15 years 4 months ago
Assertions for Dynamic Shape Analysis of List Data Structures
We introduce an assertion language for run-time checking of linked list data structure shapes. The assertion language is expressive enough to define characteristic predicates for ...
Mikhail Auguston, Miu Har Hon
CORR
2010
Springer
124views Education» more  CORR 2010»
14 years 10 months ago
Lattice model refinement of protein structures
To find the best lattice model representation of a given full atom protein structure is a hard computational problem. Several greedy methods have been suggested where results are ...
Martin Mann, Alessandro Dal Palù
BIOINFORMATICS
2006
142views more  BIOINFORMATICS 2006»
15 years 15 days ago
Intervention in a family of Boolean networks
Motivation: Intervention in a gene regulatory network is used to avoid undesirable states, such as those associated with a disease. Several types of intervention have been studied...
Ashish Choudhary, Aniruddha Datta, Michael L. Bitt...