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» Constraint Programming in Structural Bioinformatics
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BMCBI
2007
173views more  BMCBI 2007»
15 years 17 days ago
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is a high-throughput assay for DNA-protein-binding or post-translational chromatin/histone modi...
Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny ...
87
Voted
DNA
2009
Springer
185views Bioinformatics» more  DNA 2009»
15 years 7 months ago
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots
Knowledge of energy barriers between pairs of secondary structures for a given DNA or RNA molecule is useful, both in understanding RNA function in biological settings and in desig...
Ján Manuch, Chris Thachuk, Ladislav Stacho,...
108
Voted
ICECCS
2007
IEEE
129views Hardware» more  ICECCS 2007»
15 years 4 months ago
Automated Verification of Shape, Size and Bag Properties
In recent years, separation logic has emerged as a contender for formal reasoning of heap-manipulating imperative programs. Recent works have focused on specialised provers that a...
Wei-Ngan Chin, Cristina David, Huu Hai Nguyen, She...
134
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TNN
2010
182views Management» more  TNN 2010»
14 years 7 months ago
A discrete-time neural network for optimization problems with hybrid constraints
Abstract--Recurrent neural networks have become a prominent tool for optimizations including linear or nonlinear variational inequalities and programming, due to its regular mathem...
Huajin Tang, Haizhou Li, Zhang Yi
ECAI
2008
Springer
15 years 2 months ago
Solving Necklace Constraint Problems
Abstract. Some constraint problems have a combinatorial structure where the constraints allow the sequence of variables to be rotated (necklaces), if not also the domain values to ...
Pierre Flener, Justin Pearson