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» Constraint Programming in Structural Bioinformatics
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BMCBI
2006
139views more  BMCBI 2006»
15 years 16 days ago
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise li
Background: Multiple sequence alignment (MSA) is a useful tool in bioinformatics. Although many MSA algorithms have been developed, there is still room for improvement in accuracy...
Shinsuke Yamada, Osamu Gotoh, Hayato Yamana
BMCBI
2004
150views more  BMCBI 2004»
15 years 10 days ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
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AI
2010
Springer
15 years 18 days ago
Soft arc consistency revisited
The Valued Constraint Satisfaction Problem (VCSP) is a generic optimization problem defined by a network of local cost functions defined over discrete variables. It has applicatio...
Martin C. Cooper, Simon de Givry, M. Sanchez, Thom...
ESOP
2006
Springer
15 years 4 months ago
Polymorphic Type Inference for the JNI
We present a multi-lingual type inference system for checking type safety of programs that use the Java Native Interface (JNI). The JNI uses specially-formatted strings to represe...
Michael Furr, Jeffrey S. Foster
SAC
2006
ACM
15 years 12 days ago
Efficient interactive configuration of unbounded modular systems
Interactive configuration guides a user searching through a large combinatorial space of solutions to a system of constraints. We investigate a class of very expressive underlying...
Erik Roland van der Meer, Andrzej Wasowski, Henrik...