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» Constraint Programming in Structural Bioinformatics
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100
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STOC
2004
ACM
150views Algorithms» more  STOC 2004»
16 years 23 days ago
Typical properties of winners and losers in discrete optimization
We present a probabilistic analysis for a large class of combinatorial optimization problems containing, e.g., all binary optimization problems defined by linear constraints and a...
René Beier, Berthold Vöcking
108
Voted
BMCBI
2008
152views more  BMCBI 2008»
15 years 18 days ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
112
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WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
15 years 6 months ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
BMCBI
2007
180views more  BMCBI 2007»
15 years 14 days ago
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
BMCBI
2010
229views more  BMCBI 2010»
15 years 18 days ago
Mocapy++ - A toolkit for inference and learning in dynamic Bayesian networks
Background: Mocapy++ is a toolkit for parameter learning and inference in dynamic Bayesian networks (DBNs). It supports a wide range of DBN architectures and probability distribut...
Martin Paluszewski, Thomas Hamelryck