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» Constraint Programming in Structural Bioinformatics
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SIGSOFT
2007
ACM
16 years 1 months ago
Finding bugs efficiently with a SAT solver
We present an approach for checking code against rich specifications, based on existing work that consists of encoding the program in a relational logic and using a constraint sol...
Julian Dolby, Mandana Vaziri, Frank Tip
94
Voted
BMCBI
2008
78views more  BMCBI 2008»
15 years 17 days ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...
111
Voted
KDD
2003
ACM
142views Data Mining» more  KDD 2003»
16 years 26 days ago
Frequent-subsequence-based prediction of outer membrane proteins
A number of medically important disease-causing bacteria (collectively called Gram-negative bacteria) are noted for the extra "outer" membrane that surrounds their cell....
Rong She, Fei Chen 0002, Ke Wang, Martin Ester, Je...
112
Voted
SAC
2005
ACM
15 years 6 months ago
A complex biological database querying method
Many biological information systems rely on relational database management systems (RDBMS) to manage high-throughput biological data. While keeping these data well archived, organ...
Jake Yue Chen, John V. Carlis, Ning Gao
101
Voted
CSB
2003
IEEE
118views Bioinformatics» more  CSB 2003»
15 years 5 months ago
Automated Protein NMR Resonance Assignments
NMR resonance peak assignment is one of the key steps in solving an NMR protein structure. The assignment process links resonance peaks to individual residues of the target protei...
Xiang Wan, Dong Xu, Carolyn M. Slupsky, Guohui Lin