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» Constraint Programming in Structural Bioinformatics
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85
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CPAIOR
2007
Springer
15 years 3 months ago
Modeling the Regular Constraint with Integer Programming
Many optimisation problems contain substructures involving constraints on sequences of decision variables. Such constraints can be very complex to express with mixed integer progra...
Marie-Claude Côté, Bernard Gendron, L...
78
Voted
NA
2010
82views more  NA 2010»
14 years 8 months ago
Semi-definite programming techniques for structured quadratic inverse eigenvalue problems
In the past decade or so, semi-definite programming (SDP) has emerged as a powerful tool capable of handling a remarkably wide range of problems. This article describes an innovat...
Matthew M. Lin, Bo Dong, Moody T. Chu
CSB
2005
IEEE
118views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Gene Teams with Relaxed Proximity Constraint
Functionally related genes co-evolve, probably due to the strong selection pressure in evolution. Thus we expect that they are present in multiple genomes. Physical proximity amon...
Sun Kim, Jeong-Hyeon Choi, Jiong Yang
76
Voted
ICTAI
2008
IEEE
15 years 4 months ago
Haplotype Inference with Boolean Constraint Solving: An Overview
Boolean satisfiability (SAT) finds a wide range of practical applications, including Artificial Intelligence and, more recently, Bioinformatics. Although encoding some combinat...
Inês Lynce, Ana Graça, João Ma...
80
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BMCBI
2010
116views more  BMCBI 2010»
14 years 9 months ago
A hybrid approach to protein folding problem integrating constraint programming with local search
Background: The protein folding problem remains one of the most challenging open problems in computational biology. Simplified models in terms of lattice structure and energy func...
Abu Zafer M. Dayem Ullah, Kathleen Steinhöfel