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    BMCBI
    2010
    175views more  BMCBI 2010»
    Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
    14 years 10 months ago
    Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
    Download  www.biomedcentral.com
    Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
    S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
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    TCBB
    2010
    114views more  TCBB 2010»
    Cache-Oblivious Dynamic Programming for Bioinformatics
    14 years 8 months ago
    Cache-Oblivious Dynamic Programming for Bioinformatics
    Download  www.cs.utexas.edu
    — We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
    Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
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