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» Constructing Big Trees from Short Sequences
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TIT
2008
74views more  TIT 2008»
14 years 10 months ago
Optimal Parsing Trees for Run-Length Coding of Biased Data
Abstract-- We study coding schemes which encode unconstrained sequences into run-length-limited (d, k)-constrained sequences. We present a general framework for the construction of...
Sharon Aviran, Paul H. Siegel, Jack K. Wolf
84
Voted
ICPP
2005
IEEE
15 years 4 months ago
Design and Implementation of Overlay Multicast Protocol for Multimedia Streaming
In this paper, we propose a new protocol called Shared Tree Streaming (or STS in short) protocol that is designed for interactive multimedia streaming applications. STS is a decen...
Thilmee M. Baduge, Akihito Hiromori, Hirozumi Yama...
95
Voted
BMCBI
2007
162views more  BMCBI 2007»
14 years 11 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
BMCBI
2010
118views more  BMCBI 2010»
14 years 11 months ago
From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification
Background: Machine learning techniques have shown to improve bacterial species classification based on fatty acid methyl ester (FAME) data. Nonetheless, FAME analysis has a limit...
Bram Slabbinck, Willem Waegeman, Peter Dawyndt, Pa...
99
Voted
BIBM
2010
IEEE
139views Bioinformatics» more  BIBM 2010»
14 years 8 months ago
Scalable, updatable predictive models for sequence data
The emergence of data rich domains has led to an exponential growth in the size and number of data repositories, offering exciting opportunities to learn from the data using machin...
Neeraj Koul, Ngot Bui, Vasant Honavar