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» Constructing Big Trees from Short Sequences
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BMCBI
2007
169views more  BMCBI 2007»
14 years 11 months ago
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
Background: In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in ...
Ibtissem Grissa, Gilles Vergnaud, Christine Pource...
93
Voted
BMCBI
2006
120views more  BMCBI 2006»
14 years 11 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner
COCOON
2005
Springer
15 years 4 months ago
Quartet-Based Phylogeny Reconstruction from Gene Orders
Abstract. Phylogenetic reconstruction from gene-rearrangement data is attracting increasing attention from biologists and computer scientists. Methods used in reconstruction includ...
Tao Liu, Jijun Tang, Bernard M. E. Moret
BMCBI
2008
138views more  BMCBI 2008»
14 years 11 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
117
Voted
WSS
2001
133views Control Systems» more  WSS 2001»
15 years 9 days ago
A Composite Stabilizing Data Structure
Abstract. A data structure is stabilizing if, for any arbitrary (and possibly illegitimate) initial state, any sequence of sufficiently many operations brings the data structure to...
Ted Herman, Imran A. Pirwani