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» Constructing Big Trees from Short Sequences
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BMCBI
2007
179views more  BMCBI 2007»
14 years 11 months ago
rMotifGen: random motif generator for DNA and protein sequences
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Eric C. Rouchka, C. Timothy Hardin
89
Voted
IJIT
2004
15 years 9 days ago
Computing Entropy for Ortholog Detection
Abstract-- Biological sequences from different species are called orthologs if they evolved from a sequence of a common ancestor species and they have the same biological function....
Hsing-Kuo Pao, John Case
JCB
2006
97views more  JCB 2006»
14 years 11 months ago
Wavelet Analysis of DNA Walks
A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We stud...
Adrian D. Haimovich, Bruce Byrne, Ramakrishna Rama...
78
Voted
ALMOB
2008
81views more  ALMOB 2008»
14 years 11 months ago
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
Background: Sequence-based phylogeny reconstruction is a fundamental task in Bioinformatics. Practically all methods for phylogeny reconstruction are based on multiple alignments....
Holger Wagner, Burkhard Morgenstern, Andreas W. M....
99
Voted
SETA
2010
Springer
173views Mathematics» more  SETA 2010»
14 years 9 months ago
User-Irrepressible Sequences
Protocol sequences are binary and periodic sequences used in multiple-access scheme for collision channel without feedback. Each user reads out the bits from the assigned protocol ...
Kenneth W. Shum, Yijin Zhang, Wing Shing Wong