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» Constructing Information Bases Using Associative Structures
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BMCBI
2008
112views more  BMCBI 2008»
15 years 4 months ago
Evaluation of genomic island predictors using a comparative genomics approach
Background: Genomic islands (GIs) are clusters of genes in prokaryotic genomes of probable horizontal origin. GIs are disproportionately associated with microbial adaptations of m...
Morgan G. I. Langille, William W. L. Hsiao, Fiona ...
IMSCCS
2006
IEEE
15 years 10 months ago
Identification of New Members of Hydrophobin Family Using Primary Structure Analysis
Background: Hydrophobins are fungal proteins that can turn into amphipathic membranes at hydrophilic/hydrophobic interfaces by self-assembly. The assemblages by Class I hydrophobi...
Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O...
BMCBI
2008
101views more  BMCBI 2008»
15 years 4 months ago
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related
Background: For many types of analyses, data about gene structure and locations of non-coding regions of genes are required. Although a vast amount of genomic sequence data is ava...
Oliver Keller, Florian Odronitz, Mario Stanke, Mar...
KDD
2008
ACM
178views Data Mining» more  KDD 2008»
16 years 4 months ago
Training structural svms with kernels using sampled cuts
Discriminative training for structured outputs has found increasing applications in areas such as natural language processing, bioinformatics, information retrieval, and computer ...
Chun-Nam John Yu, Thorsten Joachims
ACSAC
2007
IEEE
15 years 10 months ago
Automated Security Debugging Using Program Structural Constraints
Understanding security bugs in a vulnerable program is a non-trivial task, even if the target program is known to be vulnerable. Though there exist debugging tools that facilitate...
Chongkyung Kil, Emre Can Sezer, Peng Ning, Xiaolan...