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» Construction and Applications of CRT Sequences
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BMCBI
2007
154views more  BMCBI 2007»
14 years 9 months ago
PepBank - a database of peptides based on sequence text mining and public peptide data sources
Background: Peptides are important molecules with diverse biological functions and biomedical uses. To date, there does not exist a single, searchable archive for peptide sequence...
Timur Shtatland, Daniel Guettler, Misha Kossodo, M...
FM
2005
Springer
98views Formal Methods» more  FM 2005»
15 years 3 months ago
Retrenching the Purse: Finite Sequence Numbers, and the Tower Pattern
The Mondex Electronic Purse system [18] is an outstanding example of formal refinement techniques applied to a genuine industrial scale application, and notably, was the first ve...
Richard Banach, Michael Poppleton, Czeslaw Jeske, ...
VLDB
2008
ACM
103views Database» more  VLDB 2008»
15 years 10 months ago
The optimal sequenced route query
Several variations of nearest neighbor (NN) query have been investigated by the database community. However, realworld applications often result in the formulation of new variatio...
Mehdi Sharifzadeh, Mohammad R. Kolahdouzan, Cyrus ...
ICSM
2007
IEEE
15 years 4 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
BMCBI
2005
143views more  BMCBI 2005»
14 years 9 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...