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» Construction and Applications of CRT Sequences
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BMCBI
2007
115views more  BMCBI 2007»
14 years 9 months ago
Comparing sequences without using alignments: application to HIV/SIV subtyping
Background: In general, the construction of trees is based on sequence alignments. This procedure, however, leads to loss of informationwhen parts of sequence alignments (for inst...
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Z...
CORR
2008
Springer
116views Education» more  CORR 2008»
14 years 9 months ago
The finite harmonic oscillator and its applications to sequences, communication and radar
A novel system, called the oscillator system, consisting of order of p 3 functions (signals) on the finite field p; with p an odd prime, is described and studied. The new functions...
Shamgar Gurevich, Ronny Hadani, Nir A. Sochen
JUCS
2006
112views more  JUCS 2006»
14 years 9 months ago
Construction of Wavelets and Applications
: A sequence of increasing translation invariant subspaces can be defined by the Haar-system (or generally by wavelets). The orthogonal projection to the subspaces generates a deco...
Ildikó László, Ferenc Schipp,...
RECOMB
2000
Springer
15 years 1 months ago
A compression algorithm for DNA sequences and its applications in genome comparison
We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
Xin Chen, Sam Kwong, Ming Li
CCECE
2006
IEEE
15 years 3 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...