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» Construction and Applications of CRT Sequences
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BMCBI
2005
100views more  BMCBI 2005»
14 years 9 months ago
EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Jean-Christophe Gelly, Laurent Chiche, Jér&...
CONCUR
2005
Springer
15 years 3 months ago
Concurrent Clustered Programming
d Abstract) Vijay Saraswat1 and Radha Jagadeesan2 1 IBM T.J. Watson Research Lab 2 School of CTI, DePaul University Abstract. We present the concurrency and distribution primitives...
Vijay A. Saraswat, Radha Jagadeesan
SDM
2008
SIAM
161views Data Mining» more  SDM 2008»
14 years 11 months ago
Efficient Maximum Margin Clustering via Cutting Plane Algorithm
Maximum margin clustering (MMC) is a recently proposed clustering method, which extends the theory of support vector machine to the unsupervised scenario and aims at finding the m...
Bin Zhao, Fei Wang, Changshui Zhang
BMCBI
2008
130views more  BMCBI 2008»
14 years 9 months ago
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
Kevin Brick, Elisabetta Pizzi
BMCBI
2008
128views more  BMCBI 2008»
14 years 9 months ago
An efficient visualization tool for the analysis of protein mutation matrices
Background: It is useful to develop a tool that would effectively describe protein mutation matrices specifically geared towards the identification of mutations that produce eithe...
Maria Pamela C. David, Carlo M. Lapid, Vincent Ric...