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» Constructions for Difference Triangle Sets
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BMCBI
2010
96views more  BMCBI 2010»
15 years 21 days ago
A statistical framework for differential network analysis from microarray data
Background: It has been long well known that genes do not act alone; rather groups of genes act in consort during a biological process. Consequently, the expression levels of gene...
Ryan Gill, Somnath Datta, Susmita Datta
119
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BMCBI
2007
145views more  BMCBI 2007»
15 years 17 days ago
Improved benchmarks for computational motif discovery
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...
Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Fi...
117
Voted
BMCBI
2005
143views more  BMCBI 2005»
15 years 14 days ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...
128
Voted
ISBI
2009
IEEE
15 years 7 months ago
Image-Driven Population Analysis Through Mixture Modeling
—We present iCluster, a fast and efficient algorithm that clusters a set of images while co-registering them using a parameterized, nonlinear transformation model. The output of...
Mert R. Sabuncu
99
Voted
WABI
2009
Springer
117views Bioinformatics» more  WABI 2009»
15 years 7 months ago
A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen
Background: Supertree methods comprise one approach to reconstructing large molecular phylogenies given multi-marker datasets: trees are estimated on each marker and then combined...
M. Shel Swenson, François Barbançon,...