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ACL
1989
14 years 10 months ago
The Lexical Semantics of Comparative Expressions in a Multi-Level Semantic Processor
Comparative expressions (CEs) such as "bigger than" and "more oranges than" are highly ambiguous, and their meaning is context dependent. Thus, they pose probl...
Duane E. Olawsky
BMCBI
2010
122views more  BMCBI 2010»
14 years 9 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
79
Voted
BMCBI
2007
171views more  BMCBI 2007»
14 years 9 months ago
An open source infrastructure for managing knowledge and finding potential collaborators in a domain-specific subset of PubMed,
Background: Identifying relevant research in an ever-growing body of published literature is becoming increasingly difficult. Establishing domain-specific knowledge bases may be a...
Wei Yu, Ajay Yesupriya, Anja Wulf, Junfeng Qu, Mui...
BMCBI
2008
173views more  BMCBI 2008»
14 years 9 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal
BMCBI
2008
106views more  BMCBI 2008»
14 years 9 months ago
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
Background: Identification of RNA homologs within genomic stretches is difficult when pairwise sequence identity is low or unalignable flanking residues are present. In both cases...
Usman Roshan, Satish Chikkagoudar, Dennis R. Lives...