309 search results - page 37 / 62 » Contextual alignment of biological sequences |
VLSISP
2010
14 years 7 months ago
2010
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
123
Voted
NAR
2008
15 years 14 days ago
2008
TarO (http://www.compbio.dundee.ac.uk/taro) offers a single point of reference for key bioinformatics analyses relevant to selecting proteins or domains for study by structural bi...
97
Voted
JCB
2007
15 years 12 days ago
2007
Locality is an important and well-studied notion in comparative analysis of biological sequences. Similarly, taking into account affine gap penalties when calculating biological ...
BMCBI
2010
15 years 19 days ago
2010
Background: The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of diff...
107
Voted
ECCB
2008
IEEE
15 years 7 months ago
2008
IEEE
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...