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BMCBI
2006
156views more  BMCBI 2006»
14 years 11 months ago
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
Background: Horizontal gene transfer (HGT) is considered a strong evolutionary force shaping the content of microbial genomes in a substantial manner. It is the difference in spee...
Stephan Waack, Oliver Keller, Roman Asper, Thomas ...
BMCBI
2006
137views more  BMCBI 2006»
14 years 11 months ago
A classification-based framework for predicting and analyzing gene regulatory response
Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
CORR
2006
Springer
107views Education» more  CORR 2006»
14 years 11 months ago
Optimal Scheduling of Peer-to-Peer File Dissemination
Peer-to-peer (P2P) overlay networks such as BitTorrent and Avalanche are increasingly used for disseminating potentially large files from a server to many end users via the Intern...
Jochen Mundinger, Richard R. Weber, Gideon Weiss
BMCBI
2007
126views more  BMCBI 2007»
14 years 11 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
ESE
2006
100views Database» more  ESE 2006»
14 years 11 months ago
An evaluation of combination strategies for test case selection
This paper presents results from a comparative evaluation of five combination strategies. Combination strategies are test case selection methods that combine "interesting&quo...
Mats Grindal, Birgitta Lindström, Jeff Offutt...
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