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BMCBI
2004
156views more  BMCBI 2004»
14 years 9 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...
HPCA
2006
IEEE
15 years 10 months ago
Last level cache (LLC) performance of data mining workloads on a CMP - a case study of parallel bioinformatics workloads
With the continuing growth in the amount of genetic data, members of the bioinformatics community are developing a variety of data-mining applications to understand the data and d...
Aamer Jaleel, Matthew Mattina, Bruce L. Jacob
CODES
2005
IEEE
15 years 3 months ago
Blue matter on blue gene/L: massively parallel computation for biomolecular simulation
This paper provides an overview of the Blue Matter application development effort within the Blue Gene project that supports our scientific simulation efforts in the areas of pro...
Robert S. Germain, Blake G. Fitch, Aleksandr Raysh...
CGO
2007
IEEE
15 years 2 months ago
Shadow Profiling: Hiding Instrumentation Costs with Parallelism
In profiling, a tradeoff exists between information and overhead. For example, hardware-sampling profilers incur negligible overhead, but the information they collect is consequen...
Tipp Moseley, Alex Shye, Vijay Janapa Reddi, Dirk ...
FGCS
1992
103views more  FGCS 1992»
14 years 11 months ago
Parallel Inference Machine PIM
: There have been no major control problems during the first three years of the new Tokaido-Sanyo Shinkansen (bullet train) Programmed Route Control (PRC) computer system. Prior to...
Kazuo Taki