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JPDC
2007
167views more  JPDC 2007»
15 years 2 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
STOC
2010
ACM
211views Algorithms» more  STOC 2010»
15 years 7 months ago
Distributed Computation in Dynamic Networks
In this paper we investigate distributed computation in dynamic networks in which the network topology changes from round to round. We consider a worst-case model in which the com...
Fabian Kuhn, Nancy Lynch and Rotem Oshman
SPAA
2006
ACM
15 years 9 months ago
Towards automatic parallelization of tree reductions in dynamic programming
Tree contraction algorithms, whose idea was first proposed by Miller and Reif, are important parallel algorithms to implement efficient parallel programs manipulating trees. Desp...
Kiminori Matsuzaki, Zhenjiang Hu, Masato Takeichi
ACL2
2006
ACM
15 years 9 months ago
Phylogenetic trees in ACL2
Biologists studying the evolutionary relationships between organisms use software packages to solve the computational problems they encounter. Several of these problems involve th...
Warren A. Hunt Jr., Serita M. Nelesen
CEC
2007
IEEE
15 years 9 months ago
Parameter calibration using meta-algorithms
— Calibrating an evolutionary algorithm (EA) means finding the right values of algorithm parameters for a given problem. This issue is highly relevant, because it has a high imp...
W. A. de Landgraaf, A. E. Eiben, Volker Nannen