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BMCBI
2004
208views more  BMCBI 2004»
15 years 4 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
WWW
2008
ACM
16 years 5 months ago
Externalities in online advertising
Most models for online advertising assume that an advertiser's value from winning an ad auction, which depends on the clickthrough rate or conversion rate of the advertisemen...
Arpita Ghosh, Mohammad Mahdian
STOC
1993
ACM
264views Algorithms» more  STOC 1993»
15 years 9 months ago
Contention in shared memory algorithms
Most complexity measures for concurrent algorithms for asynchronous shared-memory architectures focus on process steps and memory consumption. In practice, however, performance of ...
Cynthia Dwork, Maurice Herlihy, Orli Waarts
140
Voted
COCOON
2006
Springer
15 years 8 months ago
Reconstructing Evolution of Natural Languages: Complexity and Parameterized Algorithms
In a recent article, Nakhleh, Ringe and Warnow introduced perfect phylogenetic networks--a model of language evolution where languages do not evolve via clean speciation--and form...
Iyad A. Kanj, Luay Nakhleh, Ge Xia
160
Voted
BMCBI
2007
247views more  BMCBI 2007»
15 years 4 months ago
A survey of DNA motif finding algorithms
Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
Modan K. Das, Ho-Kwok Dai