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» Cosparse analysis modeling - uniqueness and algorithms
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123
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BMCBI
2010
100views more  BMCBI 2010»
15 years 3 months ago
Scaffold filling, contig fusion and comparative gene order inference
Background: There has been a trend in increasing the phylogenetic scope of genome sequencing without finishing the sequence of the genome. Increasing numbers of genomes are being ...
Adriana Muñoz, Chunfang Zheng, Qian Zhu, Vi...
KAIS
2011
129views more  KAIS 2011»
14 years 10 months ago
Counting triangles in real-world networks using projections
Triangle counting is an important problem in graph mining. Two frequently used metrics in complex network analysis which require the count of triangles are the clustering coefficie...
Charalampos E. Tsourakakis
152
Voted
BMCBI
2007
161views more  BMCBI 2007»
15 years 3 months ago
Efficient classification of complete parameter regions based on semidefinite programming
Background: Current approaches to parameter estimation are often inappropriate or inconvenient for the modelling of complex biological systems. For systems described by nonlinear ...
Lars Kuepfer, Uwe Sauer, Pablo A. Parrilo
137
Voted
CIAC
2006
Springer
97views Algorithms» more  CIAC 2006»
15 years 7 months ago
Network Discovery and Verification with Distance Queries
The network discovery (verification) problem asks for a minimum subset Q V of queries in an undirected graph G = (V, E) such that these queries discover all edges and non-edges o...
Thomas Erlebach, Alexander Hall, Michael Hoffmann ...
147
Voted
BMCBI
2010
108views more  BMCBI 2010»
15 years 3 months ago
A genetic ensemble approach for gene-gene interaction identification
Background: It has now become clear that gene-gene interactions and gene-environment interactions are ubiquitous and fundamental mechanisms for the development of complex diseases...
Pengyi Yang, Joshua W. K. Ho, Albert Y. Zomaya, Bi...