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BMCBI
2008
184views more  BMCBI 2008»
14 years 10 months ago
Integrating protein-protein interactions and text mining for protein function prediction
Background: Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, b...
Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich...
BMCBI
2006
127views more  BMCBI 2006»
14 years 10 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
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BMCBI
2005
121views more  BMCBI 2005»
14 years 10 months ago
Automated methods of predicting the function of biological sequences using GO and BLAST
Background: With the exponential increase in genomic sequence data there is a need to develop automated approaches to deducing the biological functions of novel sequences with hig...
Craig E. Jones, Ute Baumann, Alfred L. Brown
IACR
2011
106views more  IACR 2011»
13 years 9 months ago
Hash Functions Based on Three Permutations: A Generic Security Analysis
We consider the family of 2n-to-n-bit compression functions that are solely based on at most three permutation executions and on XOR-operators, and analyze its collision and preima...
Bart Mennink, Bart Preneel
SODA
2012
ACM
253views Algorithms» more  SODA 2012»
13 years 16 days ago
Kernelization of packing problems
Kernelization algorithms are polynomial-time reductions from a problem to itself that guarantee their output to have a size not exceeding some bound. For example, d-Set Matching f...
Holger Dell, Dániel Marx