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» Creating Database Queries by Demonstration
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VLDB
2003
ACM
147views Database» more  VLDB 2003»
15 years 10 months ago
RE-tree: an efficient index structure for regular expressions
Due to their expressive power, Regular Expressions (REs) are quickly becoming an integral part of language specifications for several important application scenarios. Many of thes...
Chee Yong Chan, Minos N. Garofalakis, Rajeev Rasto...
SIGMOD
2010
ACM
207views Database» more  SIGMOD 2010»
15 years 2 months ago
Automatic contention detection and amelioration for data-intensive operations
To take full advantage of the parallelism offered by a multicore machine, one must write parallel code. Writing parallel code is difficult. Even when one writes correct code, the...
John Cieslewicz, Kenneth A. Ross, Kyoho Satsumi, Y...
BMCBI
2010
163views more  BMCBI 2010»
14 years 10 months ago
Integration of open access literature into the RCSB Protein Data Bank using BioLit
Background: Biological data have traditionally been stored and made publicly available through a variety of on-line databases, whereas biological knowledge has traditionally been ...
Andreas Prlic, Marco A. Martinez, Dimitris Dimitro...
BMCBI
2010
205views more  BMCBI 2010»
14 years 10 months ago
A fast indexing approach for protein structure comparison
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...
BMCBI
2006
124views more  BMCBI 2006»
14 years 9 months ago
HybGFS: a hybrid method for genome-fingerprint scanning
Background: Protein identification based on mass spectrometry (MS) has previously been performed using peptide mass fingerprinting (PMF) or tandem MS (MS/MS) database searching. H...
Kosaku Shinoda, Nozomu Yachie, Takeshi Masuda, Nao...