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» Cross-species queries of large gene expression databases
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NAR
2007
113views more  NAR 2007»
14 years 9 months ago
The UCSC genome browser database: update 2007
The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate ...
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Hea...
73
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BMCBI
2005
115views more  BMCBI 2005»
14 years 9 months ago
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
Background: Enhancements in sequencing technology have recently yielded assemblies of large genomes including rat, mouse, human, fruit fly, and zebrafish. The availability of larg...
Eric C. Rouchka, Abdelnaby Khalyfa, Nigel G. F. Co...
BMCBI
2010
240views more  BMCBI 2010»
14 years 9 months ago
CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse
Background: Transcription Factors (TFs) and microRNAs (miRNAs) are key players for gene expression regulation in higher eukaryotes. In the last years, a large amount of bioinforma...
Olivier Friard, Angela Re, Daniela Taverna, Michel...
VLDB
1992
ACM
151views Database» more  VLDB 1992»
15 years 1 months ago
A Uniform Approach to Processing Temporal Queries
Research in temporal databases has mainly focused on defining temporal data models by extending existing models, and developing access structures for temporal data. Little has bee...
Umeshwar Dayal, Gene T. J. Wuu
DILS
2006
Springer
15 years 1 months ago
On Querying OBO Ontologies Using a DAG Pattern Query Language
The Open Biomedical Ontologies (OBO) is a consortium that serves as a repository of ontologies that are structured like directed acyclic graphs. In this paper we present a language...
Amarnath Gupta, Simone Santini