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» Cross-species queries of large gene expression databases
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82
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PODS
2006
ACM
121views Database» more  PODS 2006»
15 years 9 months ago
On the efficiency of checking perfect privacy
Privacy-preserving query-answering systems answer queries while provably guaranteeing that sensitive information is kept secret. One very attractive notion of privacy is perfect p...
Ashwin Machanavajjhala, Johannes Gehrke
SIGMOD
2009
ACM
291views Database» more  SIGMOD 2009»
15 years 10 months ago
Partial join order optimization in the paraccel analytic database
The ParAccel Analytic DatabaseTM is a fast shared-nothing parallel relational database system with a columnar orientation, adaptive compression, memory-centric design, and an enha...
Yijou Chen, Richard L. Cole, William J. McKenna, S...
JCB
2007
136views more  JCB 2007»
14 years 9 months ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
BMCBI
2008
136views more  BMCBI 2008»
14 years 9 months ago
GPAT: Retrieval of genomic annotation from large genomic position datasets
Background: Recent genome wide transcription factor binding site or chromatin modification mapping analysis techniques, such as chromatin immunoprecipitation (ChIP) linked to DNA ...
Arnaud Krebs, Mattia Frontini, Làszlò...
93
Voted
SIGMOD
2004
ACM
88views Database» more  SIGMOD 2004»
15 years 9 months ago
Using Reasoning to Guide Annotation with Gene Ontology Terms in GOAT
High-quality annotation of biological data is central to bioinformatics. Annotation using terms from ontologies provides reliable computational access to data. The Gene Ontology (...
Michael Bada, Daniele Turi, Robin McEntire, Robert...