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» Cross-species queries of large gene expression databases
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BMCBI
2004
131views more  BMCBI 2004»
14 years 9 months ago
Alternative mapping of probes to genes for Affymetrix chips
Background: Short oligonucleotide arrays have several probes measuring the expression level of each target transcript. Therefore the selection of probes is a key component for the...
Laurent Gautier, Morten Møller, Lennart Fri...
70
Voted
ICDE
2009
IEEE
120views Database» more  ICDE 2009»
15 years 4 months ago
Recommending Join Queries via Query Log Analysis
— Complex ad hoc join queries over enterprise databases are commonly used by business data analysts to understand and analyze a variety of enterprise-wide processes. However, eff...
Xiaoyan Yang, Cecilia M. Procopiuc, Divesh Srivast...
BMCBI
2010
91views more  BMCBI 2010»
14 years 9 months ago
Algorithm-driven Artifacts in median polish summarization of Microarray data
Background: High-throughput measurement of transcript intensities using Affymetrix type oligonucleotide microarrays has produced a massive quantity of data during the last decade....
Federico M. Giorgi, Anthony M. Bolger, Marc Lohse,...
VLDB
1999
ACM
87views Database» more  VLDB 1999»
15 years 1 months ago
Query Optimization for XML
XML is an emerging standard for data representation and exchange on the World-Wide Web. Due to the nature of information on the Web and the inherent flexibility of XML, we expect...
Jason McHugh, Jennifer Widom
EDBT
2009
ACM
241views Database» more  EDBT 2009»
15 years 4 months ago
GADDI: distance index based subgraph matching in biological networks
Currently, a huge amount of biological data can be naturally represented by graphs, e.g., protein interaction networks, gene regulatory networks, etc. The need for indexing large ...
Shijie Zhang, Shirong Li, Jiong Yang