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» Cross-species queries of large gene expression databases
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SIGMOD
2009
ACM
220views Database» more  SIGMOD 2009»
15 years 10 months ago
Keyword search in databases: the power of RDBMS
Keyword search in relational databases (RDBs) has been extensively studied recently. A keyword search (or a keyword query) in RDBs is specified by a set of keywords to explore the...
Lu Qin, Jeffrey Xu Yu, Lijun Chang
EVOW
2010
Springer
15 years 4 months ago
Towards Automatic Detecting of Overlapping Genes - Clustered BLAST Analysis of Viral Genomes
Overlapping genes (encoded on the same DNA strand but in different frames) are thought to be rare and, therefore, were largely neglected in the past. In a test set of 800 viruses ...
Klaus Neuhaus, Daniela Oelke, David Fürst, Si...
VLDB
2004
ACM
111views Database» more  VLDB 2004»
15 years 3 months ago
A Framework for Using Materialized XPath Views in XML Query Processing
XML languages, such as XQuery, XSLT and SQL/XML, employ XPath as the search and extraction language. XPath expressions often define complicated navigation, resulting in expensive...
Andrey Balmin, Fatma Özcan, Kevin S. Beyer, R...
BMCBI
2005
108views more  BMCBI 2005»
14 years 9 months ago
Storing, linking, and mining microarray databases using SRS
Background: SRS (Sequence Retrieval System) has proven to be a valuable platform for storing, linking, and querying biological databases. Due to the availability of a broad range ...
Antoine Veldhoven, Don de Lange, Marcel Smid, Vict...
BMCBI
2007
174views more  BMCBI 2007»
14 years 9 months ago
ESTuber db: an online database for Tuber borchii EST sequences
Background: The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-hou...
Barbara Lazzari, Andrea Caprera, Cristian Cosentin...