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» Cross-species queries of large gene expression databases
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SIGMOD
2009
ACM
157views Database» more  SIGMOD 2009»
15 years 10 months ago
Asynchronous view maintenance for VLSD databases
The query models of the recent generation of very large scale distributed (VLSD) shared-nothing data storage systems, including our own PNUTS and others (e.g. BigTable, Dynamo, Ca...
Parag Agrawal, Adam Silberstein, Brian F. Cooper, ...
BMCBI
2010
112views more  BMCBI 2010»
14 years 9 months ago
PhenoFam-gene set enrichment analysis through protein structural information
Background: With the current technological advances in high-throughput biology, the necessity to develop tools that help to analyse the massive amount of data being generated is e...
Maciej Paszkowski-Rogacz, Mikolaj Slabicki, M. Ter...
BMCBI
2002
137views more  BMCBI 2002»
14 years 9 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2004
123views more  BMCBI 2004»
14 years 9 months ago
galaxieEST: addressing EST identity through automated phylogenetic analysis
Background: Research involving expressed sequence tags (ESTs) is intricately coupled to the existence of large, well-annotated sequence repositories. Comparatively complete and sa...
R. Henrik Nilsson, Balaji Rajashekar, Karl-Henrik ...
BMCBI
2008
124views more  BMCBI 2008»
14 years 9 months ago
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease
Background: Comparative analysis of expression microarray studies is difficult due to the large influence of technical factors on experimental outcome. Still, the identified diffe...
Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg...