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» Cross-species queries of large gene expression databases
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BMCBI
2005
151views more  BMCBI 2005»
14 years 9 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
BMCBI
2006
147views more  BMCBI 2006»
14 years 9 months ago
QPath: a method for querying pathways in a protein-protein interaction network
Background: Sequence comparison is one of the most prominent tools in biological research, and is instrumental in studying gene function and evolution. The rapid development of hi...
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sh...
BMCBI
2007
129views more  BMCBI 2007»
14 years 9 months ago
A novel approach to sequence validating protein expression clones with automated decision making
Background: Whereas the molecular assembly of protein expression clones is readily automated and routinely accomplished in high throughput, sequence verification of these clones i...
Elena Taycher, Andreas Rolfs, Yanhui Hu, Dongmei Z...
ADC
2009
Springer
145views Database» more  ADC 2009»
15 years 1 months ago
Efficient XQuery Join Processing in Publish/Subscribe Systems
Efficient XML filtering has been a fundamental technique in recent Web service and XML publish/subscribe applications. In this paper, we consider the problem of filtering a contin...
Ryan H. Choi, Raymond K. Wong
BMCBI
2010
183views more  BMCBI 2010»
14 years 9 months ago
SING: Subgraph search In Non-homogeneous Graphs
Background: Finding the subgraphs of a graph database that are isomorphic to a given query graph has practical applications in several fields, from cheminformatics to image unders...
Raffaele Di Natale, Alfredo Ferro, Rosalba Giugno,...