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BMCBI
2007
154views more  BMCBI 2007»
14 years 10 months ago
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
Background: Identifying syntenic regions, i.e., blocks of genes or other markers with evolutionary conserved order, and quantifying evolutionary relatedness between genomes in ter...
Amit U. Sinha, Jaroslaw Meller
CORR
2006
Springer
76views Education» more  CORR 2006»
14 years 9 months ago
Inconsistent parameter estimation in Markov random fields: Benefits in the computation-limited setting
Consider the problem of joint parameter estimation and prediction in a Markov random field: i.e., the model parameters are estimated on the basis of an initial set of data, and th...
Martin J. Wainwright
GECCO
2003
Springer
15 years 3 months ago
Structural Emergence with Order Independent Representations
Abstract. This paper compares two grammar based Evolutionary Automatic Programming methods, Grammatical Evolution (GE) and Chorus. Both systems evolve sequences of derivation rules...
R. Muhammad Atif Azad, Conor Ryan
RECOMB
2006
Springer
15 years 10 months ago
Domain Architecture in Homolog Identification
Homology identification is the first step for many genomic studies. Current methods, based on sequence comparison, can result in a substantial number of mis-assignments due to the ...
Nan Song, R. D. Sedgewick, Dannie Durand
SDM
2009
SIAM
129views Data Mining» more  SDM 2009»
15 years 7 months ago
Scalable Distributed Change Detection from Astronomy Data Streams Using Local, Asynchronous Eigen Monitoring Algorithms.
This paper considers the problem of change detection using local distributed eigen monitoring algorithms for next generation of astronomy petascale data pipelines such as the Larg...
Kamalika Das, Kanishka Bhaduri, Sugandha Arora, We...